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	<title>Brute Force Physics</title>
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		<title>Brute Force Physics</title>
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		<title>FLoP: Refraction and Least Time</title>
		<link>http://bruteforcephysics.wordpress.com/2009/07/27/flop-refraction-and-least-time/</link>
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		<pubDate>Mon, 27 Jul 2009 22:09:16 +0000</pubDate>
		<dc:creator>bruteforcephysics</dc:creator>
				<category><![CDATA[Uncategorized]]></category>
		<category><![CDATA[Derivatives]]></category>
		<category><![CDATA[Feynman Lectures]]></category>
		<category><![CDATA[Least Time]]></category>
		<category><![CDATA[Numerical Analysis]]></category>
		<category><![CDATA[Refraction]]></category>
		<category><![CDATA[Snell's Law]]></category>

		<guid isPermaLink="false">http://bruteforcephysics.wordpress.com/?p=109</guid>
		<description><![CDATA[A recurring theme in physics is that of an extremum problem.  Extremal configurations are ubiquitous in nature.  A black hole is spherical because that is a surface of minimum potential.  A black hole also possesses the maximum amount of entropy possible in that region of spacetime.  If something disturbs the black hole, it will undergo [...]<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=bruteforcephysics.wordpress.com&amp;blog=8471294&amp;post=109&amp;subd=bruteforcephysics&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
			<content:encoded><![CDATA[<p>A recurring theme in physics is that of an extremum problem.  Extremal configurations are ubiquitous in nature.  A black hole is spherical because that is a surface of minimum potential.  A black hole also possesses the maximum amount of entropy possible in that region of spacetime.  If something disturbs the black hole, it will undergo a transient stage in which its relevant parameters are neither min nor max, but will readily settle back down into an equilibrium position that is a min/max.  It is therefore not surprising that many of the laws of physics can be formulated in terms of minimum principles.</p>
<p>The Principle of Least Time, originally due to Fermat, is such a principle, but it is incomplete in that the more general formulation requires that the optical path length must be stationary, meaning that there can be situations where light takes an extremal path other than a minimum.  That calculus talk is all fine and dandy provided you have a good numerical feel for what it means to analyze a stationary point.  Feynman encourages us to take such a stand&#8230;<br />
<span id="more-109"></span><br />
<img class="aligncenter size-full wp-image-112" title="LeastTime" src="http://bruteforcephysics.files.wordpress.com/2009/07/leasttime.jpg?w=500&#038;h=799" alt="LeastTime" width="500" height="799" /></p>
<p>We can easily use brute force in the <a href="http://pastebin.com/f234a7bdd">m-file Least Time</a> to illustrate that the least time and least distance paths vary significantly.   The least time path has the smallest optical path length, which is the product of the distance traversed by light times the index of refraction experienced during the traversal.  We can further plot the optical path length (opl) vs. the distance along the mirror axis and carry out some numerical analysis that Feynman alludes to.</p>
<p><img class="aligncenter size-full wp-image-114" title="Fig26-4" src="http://bruteforcephysics.files.wordpress.com/2009/07/fig26-4.jpg?w=304&#038;h=277" alt="Fig26-4" width="304" height="277" /></p>
<p>First, we take the same setup from <a href="http://bruteforcephysics.wordpress.com/2009/07/19/flop-reflection-and-least-distance/">FLoP: Reflection and Least Distance</a>, and this time work with opl&#8217;s instead of distances by simply taking our distance formula results and multiplying by n = 1.5 in water.  Points A and B are again randomly assigned, and point c calculated based on those.  Here&#8217;s the result:</p>
<p><img class="aligncenter size-full wp-image-122" title="SnellsLaw" src="http://bruteforcephysics.files.wordpress.com/2009/07/snellslaw.jpg?w=500&#038;h=375" alt="SnellsLaw" width="500" height="375" />The crooked path has a shorter time of flight according to the numbers.  We see that the ratio of indices of refraction are related to the simple geometry by Snell&#8217;s Law, giving us a check on our brute force calculation.</p>
<p>In referencing Fig 26-5, Feynman has us picture a function that has a minimum, zoom in on that minimum, and see that nearby points have a negligible first derivative but small second derivative.</p>
<p><img class="aligncenter size-full wp-image-123" title="Minimum" src="http://bruteforcephysics.files.wordpress.com/2009/07/minimum.jpg?w=296&#038;h=251" alt="Minimum" width="296" height="251" />Recall that a first derivative is just the slope of the tangent line at the point in question, so that if it is nearly zero then its tangent line is horizontal and thus unchanging. Points surrounding a minimum are literally dead points, their pulses flat-lined.  The second derivative indicates if the original function is concave up (has a min) or concave down (has a max).  A <em>positive</em> second derivative is for concave up since as we move farther to the right away from the minimum, the function is increasing.  It&#8217;s as if we take those surrounding dead points, compares their pulses (slopes), and depending on which one is closer to zero then the rest, tells you whether the function is overall increasing or decreasing or both on either side, in the case of an inflection.  To make a plot for this, we first need to numerically compute the derivatives.  You basically picture a square grid to serve as your coordinate system, where each grid mark is traversed left and right by dx and up and down by dy.  A derivative is thus dy/dx, but you must indicate which grid point you&#8217;re at, so it&#8217;s more like [y(i+1)-y(i)]/eps for a uniform spacing <em>eps</em> on x.  If you then step up the y(i+1) to y(i+2) and the y(i) to y(i+1),  take the difference and divide each by eps, then subtract those and again divide by eps, you arrive at the second derivative.  There are multiple variations on this process, as you can instead opt to step half-way on either side of a grid point, which leads to a more accurate numerical derivative.  But we can choose a small enough eps such that this way is plenty accurate.  We thus have the following MATLAB function to compute the 1st and 2nd variations</p>
<p><code>function [dx,ddx] = variation(y,i,eps)<br />
dx =(y(i+1)-y(i))/eps;<br />
ddx =(y(i+2)-2*y(i+1)+y(i))/eps/eps;</code></p>
<p>(To run this function with the <a href="http://pastebin.com/f1d6e02d3">m-file Stationary</a> to produce the following graph, save the function in a separate m-file titled &#8216;variation&#8217; and run it in the same workspace as the m-file.)</p>
<p><img class="aligncenter size-full wp-image-113" title="Variation" src="http://bruteforcephysics.files.wordpress.com/2009/07/variation.jpg?w=500&#038;h=375" alt="Variation" width="500" height="375" />Point c is the red mark corresponding to the least time path, whereas the black mark is the straight line (shortest distance) path.  The first derivative at c is zero to four decimal places, while it is nearly -0.3 at the black mark, indicating that that the straight line path is not near a minimum and its slope is decreasing.  I picked an eps value so small that the red and black marks are separated by about 15,000 ticks in the index i, meaning if I type in variation(opl, i+100, eps) into the command window, I will still be computing a 1st derivative close enough to point c to give me a value close to zero.  I get .002, actually.  Notice that for both marks the 2nd derivative is substantial and positive, indicating a significant numerical variation past a 1st derivative and an overall concave up function.</p>
<p>From a sheerly mathematical viewpoint, we see that a derivative at one point tells you a lot of information about function on a larger scale.  In fact, if we know all of the derivatives at a single point, we can reproduce the entire function via a Taylor expansion.  That&#8217;s just amazing!  If you&#8217;re working with derivatives, you&#8217;re necessarily studying dynamics, which is what physics is all about.  So we can place a concrete example to the abstract mathematical notions and create some plots to see that the individual numbers are indeed behaving in this fashion.  Something about that is immensely satisfying.</p>
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			<media:title type="html">LeastTime</media:title>
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			<media:title type="html">Fig26-4</media:title>
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			<media:title type="html">SnellsLaw</media:title>
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			<media:title type="html">Minimum</media:title>
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		<title>Mathematicians vs. Physicists</title>
		<link>http://bruteforcephysics.wordpress.com/2009/07/27/mathematicians-vs-physicists/</link>
		<comments>http://bruteforcephysics.wordpress.com/2009/07/27/mathematicians-vs-physicists/#comments</comments>
		<pubDate>Mon, 27 Jul 2009 21:10:33 +0000</pubDate>
		<dc:creator>bruteforcephysics</dc:creator>
				<category><![CDATA[Uncategorized]]></category>
		<category><![CDATA[mathematicians]]></category>
		<category><![CDATA[physicists]]></category>

		<guid isPermaLink="false">http://bruteforcephysics.wordpress.com/?p=118</guid>
		<description><![CDATA[Project Tuva hopes to introduce physics to the masses through entertaining lectures à la Feynman.  Thrilled with the first lecture, I encouraged my busy girlfriend to take time over the weekend to watch the second lecture with me.  Judging purely by her reaction to &#8220;The Relation of Mathematics and Physics,&#8221; Bill Gate&#8217;s efforts are not [...]<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=bruteforcephysics.wordpress.com&amp;blog=8471294&amp;post=118&amp;subd=bruteforcephysics&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
			<content:encoded><![CDATA[<p><a href="http://research.microsoft.com/apps/tools/tuva/">Project Tuva</a> hopes to introduce physics to the masses through entertaining lectures <span>à la</span> Feynman.  Thrilled with the first lecture, I encouraged my busy girlfriend to take time over the weekend to watch the second lecture with me.  Judging purely by her reaction to &#8220;The Relation of Mathematics and Physics,&#8221; Bill Gate&#8217;s efforts are not efficacious.  But it&#8217;s too soon to write him a reimbursement check, as she falls asleep anytime we curl up to watch something on the couch.  I, on the other hand, was completely engaged with this lecture, as was the original crowd it seemed.  My favorite joke was in there, probably in its original form.  These days it&#8217;s told as, A physicist seeks out a brilliant mathematician and asks, &#8221; how do you visualize four-dimensional space?&#8221;  The mathematician responds, &#8220;Well, first I visualize <em>n-dimensions</em>, and then I set n equal to four.&#8221; If I tell it just right, that can actually get a laugh out of my girlfriend.  Since she is a math PhD student, by the way, I thought it appropriate to assign gender when contrasting mathematicians and physicists in what follows.</p>
<p>Feynman stresses that the physicist needs to assign physical meaning to the equations, whereas the mathematician can just keep hammering away with a rigorous approach to everything.  He in essence says that the two attack a given problem in completely different ways, albeit work with the same mathematical machinery.  When researching something new, the physicist need not bother with organizing his thoughts in a coherent framework that can then methodically be applied to gradually get to the heart of the problem.  Rather, he let&#8217;s his intuition do that, and relies on conservation laws and simple models to try to get a grip on the problem, letting it simmer in his head for weeks or months on end, until finally one day, insight gleams forth under some relaxing state of mind, and everything falls together.  The mathematician, meanwhile, works hard to put everything in place before she ever begins.  She likes her problems well-posed, for then she can reach into her  <span style="text-decoration:line-through;">bag </span>organized case of tools and bring her training to bear on the problem in a straightforward manner, deriving the result, establishing convergence, proving uniqueness, etc.  That process certainly requires ingenuity and sometimes strokes of genius, but it follows one after the other in a laid out procedure.</p>
<p>The physicist follows a different line of attack.  His mind is quite cluttered.  I would compare him to a curious craftsman trying to open up a black box, unaware of what tool he might need next.  He doesn&#8217;t have the luxury of an organized workspace; he must keep all of his tools at his fingertips.  Sure, he possesses a deep understanding of mathematics.  Otherwise, it&#8217;s unlikely he could ever forge connections among similar concepts in physics, let alone among the vast fields of physics, that are crucial to making significant progress.  But he doesn&#8217;t concern himself with the likes of real analysis past a certain stage of utility.</p>
<p>I sort of like my black box analogy because it captures, if only in a highly simplified and over-generalized way, the interplay of these two fields.  The boxes are the problems from physics, and the tools to open them are mathematics.  History has shown that after opening one black box, the physicist is presented with another inside, as if he had just opened a Russian nested doll.  Excited, he gets to work on trying to open the next black box, while the mathematician often occupies herself with polishing up the one he just opened.  Or she might be developing a tool which he needs to open the next box, yet neither has any clue that such is the case at that point.   Occasionally the tools to open the box have been around for many years but the physicist has not learned to use them.  And certainly many a mathematician take a stab at opening the boxes themselves, more often than not only to pry it open part way until one day a physicist comes along and shakes it up and down, pours out all of its contents, and leaves it swinging from its hinges.</p>
<p>It used to be that mathematicians took all of their problems from physicists for the most part.  However, now that math is infiltrating other fields at an overwhelming pace, mathematicians are beginning to learn less and less about physics.  Yet the reverse is not true, while the concepts of physics are also finding numerous applications in other areas.  It remains to be seen what will come of all of this, but I can say that being in a relationship with a mathematician has only heightened my respect for them overall, as the skill set they develop truly is unique.</p>
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		<title>Discovering Feynman</title>
		<link>http://bruteforcephysics.wordpress.com/2009/07/19/discovering-feynman/</link>
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		<pubDate>Mon, 20 Jul 2009 02:24:39 +0000</pubDate>
		<dc:creator>bruteforcephysics</dc:creator>
				<category><![CDATA[Uncategorized]]></category>
		<category><![CDATA[Feynman Lectures]]></category>

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		<description><![CDATA[Inspired by Sean&#8217;s post a few days ago about the release of Feynman&#8217;s Lectures on the Character of Physical Law, I felt compelled to share my first time encountering the Feynman Lectures.  I don&#8217;t recall learning of Richard Feynman in high school, and that is probably not uncommon, as the names Einstein and Hawking dominate [...]<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=bruteforcephysics.wordpress.com&amp;blog=8471294&amp;post=30&amp;subd=bruteforcephysics&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
			<content:encoded><![CDATA[<p>Inspired by <a href="http://blogs.discovermagazine.com/cosmicvariance/2009/07/16/feynmans-character-of-physical-law-lectures/">Sean&#8217;s post</a> a few days ago about the release of Feynman&#8217;s Lectures on the Character of Physical Law, I felt compelled to share my first time encountering the Feynman Lectures.  I don&#8217;t recall learning of Richard Feynman in high school, and that is probably not uncommon, as the names Einstein and Hawking dominate at that age.  My first exposure was in my second semester in college, when I took my first college physics class, &#8220;Light&#8221;, which covered basic optics and special relativity.  The instructor was an adjunct from Caltech and would print us relevant chapters from Feynman&#8217;s Lectures.  Fast forward to the following winter, after taking an introductory E/M course and firmly committing myself to a major in physics, when I sat down to read Six Not So Easy Pieces, which are the six chapters covering vectors, symmetry in physical laws, relativity, and curved spacetime&#8212;the more engaging topics from Feynman&#8217;s first volume of lectures.</p>
<p>A typical setting for digesting thought-provoking material is not the front seat of a Pontiac in the midnight to early morning hours at below freezing temperatures.  It was the last week of December in 2003, and the country was on Orange Alert, which had prompted a massive deployment of security guards at spots thought to be at high-risk for a terrorist attack all throughout the US.  I had signed up for a graveyard shift guarding one of the city&#8217;s main water towers to make some quick cash.   Aside from turning my engine on for a five-minute perimeter-check every hour, I was to stay parked in a dirt lot overlooking the tower for my entire eight-hour shift, making sure I radio in every 20 minutes to let them know I am still awake.  My friends called this a most unbearable job description.  I thought it was better than a minimum duty work-study job at a library.</p>
<p>Clutching a flashlight in order to read Feynman&#8217;s words in the blackness around me, it slipped my mind that I was still cold with three layers of clothing on top of thermal underwear.  Captivated by his coherent account of the field I hoped to dedicate my life to, I took in his sense of wonder and admiration for our ability to really <em>understand</em>.  I would periodically glance around in bemusement at the phenomena around me, such as the subtle green glow emanating from the LED of my walkie talkie, which was neatly spread about on the frozen precipitation of my windshield.  I was looking out into the night sky pondering General Relativity, confident that with Feynman guiding me through the language of nature, I could grasp its deepest secrets.  It was an enlightening experience, a crossroad between boyhood wonder and sophisticated thinking, one that I look back on when I am in need of comfort for pursuing (as a first choice) a career with dim prospects for employment.</p>
<p>Every field has its heros.  The nice thing about making Feynman one is that he is not nearly as mythical in the popular press as Einstein, yet he was certainly a cut above the rest.  I agree with <a href="http://blogs.discovermagazine.com/cosmicvariance/2007/02/25/the-cult-of-genius/">Julianne&#8217;s take on Feynman</a>, though I had no qualms about worshiping him as an undergrad.  Feynman worship in graduate school should be minimized, as that is setting yourself up for failure (or for <a onclick="return mugicPopWin(this,event);" oncontextmenu="mugicRightClick(this);" href="http://www.amazon.com/My-Life-Quant-Reflections-Physics/dp/0471394203">revitalizing Wal Street</a>).  However, his lectures should continue to be utilized, as they are brilliant.</p>
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		<title>FLoP: Reflection and Least Distance</title>
		<link>http://bruteforcephysics.wordpress.com/2009/07/19/flop-reflection-and-least-distance/</link>
		<comments>http://bruteforcephysics.wordpress.com/2009/07/19/flop-reflection-and-least-distance/#comments</comments>
		<pubDate>Mon, 20 Jul 2009 00:38:12 +0000</pubDate>
		<dc:creator>bruteforcephysics</dc:creator>
				<category><![CDATA[Uncategorized]]></category>
		<category><![CDATA[Principle of Least Time]]></category>
		<category><![CDATA[Reflection]]></category>
		<category><![CDATA[Refraction]]></category>

		<guid isPermaLink="false">http://bruteforcephysics.wordpress.com/?p=93</guid>
		<description><![CDATA[Anytime that light hits a medium with a different index of refraction, some is reflected and some is transmitted inside and refracted.  For a given angle of incidence, we quantify the angle of reflection and refraction.  The former is easy: angle in equals angle out, but the latter is more tricky&#8212;it&#8217;s given by Snell&#8217;s Law.  [...]<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=bruteforcephysics.wordpress.com&amp;blog=8471294&amp;post=93&amp;subd=bruteforcephysics&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
			<content:encoded><![CDATA[<p>Anytime that light hits a medium with a different index of refraction, some is reflected and some is transmitted inside and refracted.  For a given angle of incidence, we quantify the angle of reflection and refraction.  The former is easy: angle in equals angle out, but the latter is more tricky&#8212;it&#8217;s given by Snell&#8217;s Law.  It so happens that we get both of these &#8216;laws&#8217; due to a beautifully simple property of light, that it obeys the principle of least time.   As light travels from one medium to the next, it takes a path that minimizes the time of travel.  For the case of reflection off of an interface, assuming light remains in the same medium the whole time, that light takes the path of least time is equivalent to it taking the path of least distance, since d=vt and v is the same before and after reflection.</p>
<p>Feynman&#8217;s description of the problem poses a method of brute force attack.  First, his excerpt:<br />
<span id="more-93"></span></p>
<p><img title="LeastDist" src="http://bruteforcephysics.files.wordpress.com/2009/07/leastdist.jpg?w=499&#038;h=507" alt="LeastDist" width="499" height="507" /></p>
<p style="text-align:center;"><img title="Fig26-3" src="http://bruteforcephysics.files.wordpress.com/2009/07/fig26-3.jpg?w=284&#038;h=244" alt="Fig26-3" width="284" height="244" /></p>
<p>It is easy enough on a computer to construct the set-up in Fig 26-3 on a coordinate system.  We construct the 1st and 4th quadrants as running from 0 to 1 on the x-axis and 1 to -1 on the y-axis.  Point A is placed at some height on the y-axis and point B at some negative height on x=1.  We can then use the distance formula to compute all the possible paths from A to B as the light ray hits every point between D and F.  The smallest distance corresponds to point C.  <a href="http://bruteforcephysics.pastebin.com/f65795e11">The m-file</a> prompts for how many divisions to make from D to F and computes both the analytic solution based on y=mx+b and checks it with the brute force method of comparing each distance.  The result is plotted below:</p>
<p><img class="aligncenter size-full wp-image-98" title="LeastDistPlot" src="http://bruteforcephysics.files.wordpress.com/2009/07/leastdistplot.jpg?w=500&#038;h=375" alt="LeastDistPlot" width="500" height="375" /></p>
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			<media:title type="html">LeastDist</media:title>
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		<media:content url="http://bruteforcephysics.files.wordpress.com/2009/07/fig26-3.jpg" medium="image">
			<media:title type="html">Fig26-3</media:title>
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		<media:content url="http://bruteforcephysics.files.wordpress.com/2009/07/leastdistplot.jpg" medium="image">
			<media:title type="html">LeastDistPlot</media:title>
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		<title>FLoP posts to come</title>
		<link>http://bruteforcephysics.wordpress.com/2009/07/19/flop-posts-to-come/</link>
		<comments>http://bruteforcephysics.wordpress.com/2009/07/19/flop-posts-to-come/#comments</comments>
		<pubDate>Sun, 19 Jul 2009 23:12:44 +0000</pubDate>
		<dc:creator>bruteforcephysics</dc:creator>
				<category><![CDATA[Uncategorized]]></category>
		<category><![CDATA[Feynman Lectures on Physics]]></category>
		<category><![CDATA[Refraction]]></category>

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		<description><![CDATA[In graduate level special topics classes in physics and math, professors often pick and choose material from several different texts and research papers of interest.  You might find that they just xerox their own copies of the articles, which often tend to have scribbles all over them.  This is indicative of active reading.  Professors don&#8217;t [...]<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=bruteforcephysics.wordpress.com&amp;blog=8471294&amp;post=78&amp;subd=bruteforcephysics&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
			<content:encoded><![CDATA[<p>In graduate level special topics classes in physics and math, professors often pick and choose material from several different texts and research papers of interest.  You might find that they just xerox their own copies of the articles, which often tend to have scribbles all over them.  This is indicative of active reading.  Professors don&#8217;t just curl up on the couch with a research article in the same way they might with a novel.  As a matter of habit, they follow the argument presented by the author with a pencil in hand, filling in any skipped steps in the calculations.  The benefits of mimicking this practice of marginal notes seemed, well, marginal, until I began teaching and could fully appreciate how much this aids in my understanding.</p>
<p>As I am reviewing basics physics by reading through some chapters in the Feynman Lectures,  I often feel compelled to take this one step further.  Feynman was a brilliant theorist who could have easily confounded readers by lecturing at a mathematically over-sophisticated level, but rather he describes his subject in a very applied, intuitive manner.  His lectures are strewn thick with what I call &#8220;numerical nuggets&#8221;, indicating his ability to perform numerical analysis in his head, if only at qualitative level.  You can tell that he arrives at an analytic expression using calculus only after he deeply ponders the limiting process underlying it.  To fully benefit from Feynman&#8217;s insight, therefore, I am attempting to quantify some examples of this.</p>
<p>Since FLoP is an acronym for the Feynman Lectures on Physics with an appropriate numerical pun, it makes for a good title, I think.  And it certainly describes my blogging effort overall as viewed by my girlfriend, who deems it an utter failure.  In any case, it provides me additional motivation to not review college physics passively and at the same time keep up with my coding skills.<br />
<span id="more-78"></span><br />
I am currently reading chapter 26, Optics: The Principle of Least Time.  As an easy example, consider Feynman&#8217;s description of refraction studies prior to the discovery of Snell&#8217;s Law</p>
<p style="text-align:left;"><img class="aligncenter size-full wp-image-90" title="AirwaterDescrip" src="http://bruteforcephysics.files.wordpress.com/2009/07/airwaterdescrip.jpg?w=500&#038;h=226" alt="AirwaterDescrip" width="500" height="226" /><img class="aligncenter size-full wp-image-91" title="AirwaterTable" src="http://bruteforcephysics.files.wordpress.com/2009/07/airwatertable.jpg?w=226&#038;h=263" alt="AirwaterTable" width="226" height="263" />We can take a few angles in air and verify the interpolation Feynman mentions in parenthesis.  The fact that they fit to a parabola is indicative of the nonlinearity of Snell&#8217;s law.  The following code will give us a plot:<br />
<code><br />
air = [10 30 60 80];<br />
water = [7.5 22 40.5 48];<br />
plot(air, water)<br />
title('Refracted angle vs. incident angle at an air-water interface')<br />
</code></p>
<p>We can then go to tools, basic fitting, select &#8216;linear&#8217; and &#8216;parabolic&#8217; and check &#8216;show equation&#8217;, to produce</p>
<p><img class="aligncenter size-full wp-image-84" title="AirwaterPlot" src="http://bruteforcephysics.files.wordpress.com/2009/07/airwaterplot.jpg?w=500&#038;h=375" alt="AirwaterPlot" width="500" height="375" />from which we see that the linear fit is way off.</p>
<p>For the most part, time constraints will prohibit me from walking through the MATLAB code, so I&#8217;ll ordinarily toss the m-files in a paste-bin and just present the results.</p>
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		<title>Gravitational Wave Astronomy Summer School</title>
		<link>http://bruteforcephysics.wordpress.com/2009/07/10/gravitational-wave-astronomy-summer-school/</link>
		<comments>http://bruteforcephysics.wordpress.com/2009/07/10/gravitational-wave-astronomy-summer-school/#comments</comments>
		<pubDate>Fri, 10 Jul 2009 10:13:19 +0000</pubDate>
		<dc:creator>bruteforcephysics</dc:creator>
				<category><![CDATA[Uncategorized]]></category>
		<category><![CDATA[LIGO]]></category>
		<category><![CDATA[VIRGO]]></category>

		<guid isPermaLink="false">http://bruteforcephysics.wordpress.com/?p=54</guid>
		<description><![CDATA[The fifth summer school for Gravitational Wave Astronomy (GWA) wrapped up a month ago on South Padre Island, a popular Spring break island resort spot on the Texas border near Mexico.  The Brownsville Herald quoted Peter Saulson as saying that the 2-week program is &#8220;the only way to learn the basics of this new scientific [...]<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=bruteforcephysics.wordpress.com&amp;blog=8471294&amp;post=54&amp;subd=bruteforcephysics&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
			<content:encoded><![CDATA[<p>The fifth summer school for Gravitational Wave Astronomy (GWA) wrapped up a month ago on South Padre Island, a popular Spring break island resort spot on the Texas border near Mexico.   <a href="http://www.brownsvilleherald.com/news/university-99062-padre-lone.html">The Brownsville Herald</a> quoted <a href="http://www.gravity.phy.syr.edu/group_members/faculty/peter_saulson.html">Peter Saulson</a> as saying that the 2-week program is &#8220;the only way to learn the basics of this new scientific field of gravitational wave detection.&#8221;   If you haven&#8217;t heard of Dr. Saulson, he is a big name on the experimental side of GWA.   His PhD adviser was David Wilkinson of WMAP fame (and he was the esteemed colleague of Cosmic Variance&#8217;s Mark Trodden before Mark left for Penn).   He is a fantastic lecturer, one of four that the NASA-funded <a href="http://cgwa.phys.utb.edu/index.php">Center of Gravitational Wave Astronomy</a> has hired to run the summer school.</p>
<div id="attachment_62" class="wp-caption alignleft" style="width: 310px"><img class="size-medium wp-image-62" title="group" src="http://bruteforcephysics.files.wordpress.com/2009/07/group.jpg?w=300&#038;h=225" alt="End of Week 1" width="300" height="225" /><p class="wp-caption-text">End of Week 1 Group Photo</p></div>
<p>I attended the program <a href="http://phys.utb.edu/outreach/gwasummerold/">last year</a> and would summarize it as the single most memorable experience pertaining to physics that I have ever had.   The group of students in attendance were top-caliber, and I made friends with almost all of them, some of whom I still keep in touch with on facebook.  Lots of them were already involved with GWA in one way or another, a couple having internships lined up at LIGO and a couple more doing research for their advisers on data analysis or numerical relativity.<br />
<span id="more-54"></span></p>
<div id="attachment_65" class="wp-caption alignright" style="width: 310px"><img class="size-medium wp-image-65" title="Riding the Wave" src="http://bruteforcephysics.files.wordpress.com/2009/07/onthewave2.jpg?w=300&#038;h=235" alt="On The Wave, the island's bus system" width="300" height="235" /><p class="wp-caption-text">On The Wave, the island&#39;s bus system</p></div>
<p>One in particular (far right, on the right) persuaded me into a year long furlough away from computation, having enticed me into experiment with his descriptions of what a joyous time he was having researching the optical system that will be placed in Advanced LIGO.   (He was a great conversationalist and spoke five languages, in fact&#8211;one of them Russian, which came in handy when I met an attractive Russian girl on the bus to class; he scored me a date with her.)  Combined with the enthusiasm Dr. Saulson expressed in his lectures, my newfound interest in optical science took on a life of its own and I ended up deserting gravitational waves within a couple months, took an experimental physics class the following semester, and applied to the College of Optical Sciences at the University of Arizona to do a PhD in optics last December.  With the rejection later came the realization that I am not fit for the laboratory, but my interest in optics has persisted.  Luckily, there&#8217;s plenty of computation to be done in that field.</p>
<p>My memory is fading, but I believe the schedule for the summer school was 9am to 4pm with an hour for lunch between morning and afternoon sessions and two fifteen minute coffee-breaks within each session.   The layout was very conducive to helping <del datetime="2009-07-10T05:45:17+00:00">vacationers</del> serious students digest as much material as possible.  There would be a lecture followed by some sort of problem solving session (except in Dr. Saulson&#8217;s case, as he preferred to give two lectures&#8230;fine by us, since that meant no homework.)   The first week covered Peter&#8217;s talks on the experimental aspects of GWA in the morning and <a href="http://cgwa.phys.utb.edu/People/Faculty.php">Dr. Creighton</a>&#8216;s lecture and homework session on the relevant astrophysics of the gravitational wave sources in the afternoon.  The second week dove into numerical relativity in the mornings by Dr. Gonzalez, followed by the pertinent data analysis techniques in the afternoon, presented by another Peter, <a href="http://www2.physics.umd.edu/~pshawhan/">Dr. Peter Shawhan</a>.</p>
<div id="attachment_58" class="wp-caption aligncenter" style="width: 510px"><img class="size-full wp-image-58" title="The Compuer Lab" src="http://bruteforcephysics.files.wordpress.com/2009/07/lab.jpg?w=500&#038;h=375" alt="The Compuer Lab" width="500" height="375" /><p class="wp-caption-text">Engaged with MATLAB and Dr. Shawhan&#39;s Exercises</p></div>
<p>I enjoyed Dr. Shawhan&#8217;s section the most, as he prepared a fantastic <a href="http://www2.physics.umd.edu/~pshawhan/courses/CGWA2009/">series of exercises</a> to work on after his lecture, which was done in the adjacent room with computers seen above.   The exercises covered the basic methods to extract a gravitational wave signal from the raw stream of data collected, which is full of all sorts of noise.  This was to be performed using&#8211;you guessed it&#8211;MATLAB!  I contemplated re-solving all of the problems and posting about them, and finally decided that would be way too much work.   But then I noticed that Peter posted solutions this year!  If physics is your thing, then studying his solutions is by far the most rewarding way to go about learning MATLAB.  I hope to document in more detail the code for my favorite problems and maybe add a bit to them in a post, as only a one-liner is needed to play the sound of an incoming gravity wave signal (reminiscent of my last post, <a href="http://bruteforcephysics.wordpress.com/2009/07/08/hacking-the-payphone/">Hacking the Pay Phone</a>).</p>
<p>Week 1 had a good deal of homework for the astrophysics section, which for the first couple days was done in the kitchen of the Super 8 motel we were all staying at.  That gave everyone the opportunity to interact and argue over the proper way to manipulate tensors.  Come day 4 or so it was all fun and games.</p>
<div id="attachment_57" class="wp-caption alignleft" style="width: 310px"><img class="size-medium wp-image-57" title="Dorados" src="http://bruteforcephysics.files.wordpress.com/2009/07/dorados.jpg?w=300&#038;h=225" alt="with Dr. Saulson" width="300" height="225" /><p class="wp-caption-text">Dinner with Dr. Saulson</p></div>
<p>The beach was waiting for us once school ended and we usually had a dinner planned with one of the professors.  An Italian guy was fond of gathering up a group to tour the local bars later in the evening, but I was usually too worn out and wouldn&#8217;t let myself drink, having hit up <a href="http://www.spislandfitness.com/">the local gym</a> in the afternoon.  Towards the end, we all took the dolphin watch tour, shown below, which was most relaxing.</p>
<div id="attachment_60" class="wp-caption aligncenter" style="width: 510px"><img class="size-full wp-image-60" title="Dolphin watch" src="http://bruteforcephysics.files.wordpress.com/2009/07/dolphinwatch.jpg?w=500&#038;h=375" alt="with Dr. Shawhan" width="500" height="375" /><p class="wp-caption-text">Dolphin Watch with Dr. Shawhan</p></div>
<p>As a whole, the program managed to delve into many of the ins and outs of the field, including tidbits from science policy on managing funding for the detectors, the interaction between LIGO and the other facilities such as VIRGO, and the publishing issues that arise in a worldwide collaboration involving thousands of scientists.  Just writing this post reminds me of how excited I was to be there in the company of other students with the same passion as me at the time and with researchers who have no doubt in their minds that a conclusive direct detection of gravitational waves will be made in the next few years.   If professional physics conferences like <a href="http://blogs.discovermagazine.com/cosmicvariance/2009/07/05/catching-the-waves/">the one Daniel at CV posted on</a> the other day are anything like this, I see why there are so many of them.  If you are an upper level undergrad or a beginning graduate student with an interest in GWA, <a href="http://phys.utb.edu/outreach/gwasummer09/">consider applying</a> to next year&#8217;s summer school.</p>
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		<title>Hacking the Payphone</title>
		<link>http://bruteforcephysics.wordpress.com/2009/07/08/hacking-the-payphone/</link>
		<comments>http://bruteforcephysics.wordpress.com/2009/07/08/hacking-the-payphone/#comments</comments>
		<pubDate>Thu, 09 Jul 2009 03:52:54 +0000</pubDate>
		<dc:creator>bruteforcephysics</dc:creator>
				<category><![CDATA[Uncategorized]]></category>
		<category><![CDATA[fft]]></category>
		<category><![CDATA[fourier analysis]]></category>
		<category><![CDATA[fourier transform]]></category>
		<category><![CDATA[hacking]]></category>
		<category><![CDATA[pay phone]]></category>
		<category><![CDATA[periodogram]]></category>

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		<description><![CDATA[There was a scene in the movie Hackers in which (according to wiki) &#8220;the characters Razor and Blade briefly explain how to manipulate payphones to make free calls.&#8221;  I have no clue about the validity of that, but I do recall them having a cassette recording of the dial tones for their call.  From the [...]<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=bruteforcephysics.wordpress.com&amp;blog=8471294&amp;post=35&amp;subd=bruteforcephysics&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
			<content:encoded><![CDATA[<p>There was a scene in the movie Hackers in which (<a href="http://en.wikipedia.org/wiki/Payphone">according to wiki</a>) &#8220;the characters Razor and Blade briefly explain how to manipulate payphones to make free calls.&#8221;  I have no clue about the validity of that, but I do recall them having a cassette recording of the dial tones for their call.  From the creator of MATLAB himself, Cleve Moler, in <a href="http://www.mathworks.com/moler/chapters.html">his free online book</a>, here is one way to generate the tones for that recording.</p>
<blockquote>
<p style="text-align:left;"><span style="color:#333333;">8.1 Touch-Tone Dialing<br />
Touch-tone telephone dialing is an example of everyday use of Fourier analysis. The<br />
basis for touch-tone dialing is the Dual Tone Multi-Frequency (DTMF) system. The<br />
program touchtone demonstrates how DTMF tones are generated and decoded.<br />
The telephone dialing pad acts as a 4-by-3 matrix (Figure 8.1). Associated with<br />
each row and column is a frequency. These basic frequencies are<br />
fr = [697 770 852 941];<br />
fc = [1209 1336 1477];</span></p>
<p style="text-align:left;">
<p><span id="more-35"></span></p>
<div id="attachment_39" class="wp-caption aligncenter" style="width: 356px"><img class="size-full wp-image-39" title="telpad" src="http://bruteforcephysics.files.wordpress.com/2009/07/telpad1.jpg?w=346&#038;h=456" alt="tel pad" width="346" height="456" /><p class="wp-caption-text">tel pad</p></div></blockquote>
<p style="text-align:left;">In order to make a sound in MATLAB, we need to first prompt for the desired number,</p>
<p style="text-align:left;"><code><span style="color:#000080;">%prompts for a keypad # based on its location, i.e. #4 has (k,j)=(2,1)<br />
x(1)=input('enter row k\n');<br />
x(2)=input('enter column j\n');</span></code></p>
<p style="text-align:left;">Those numbers specify the row and column location of the digit, so next we match them to their corresponding frequency according to the dial pad in the picture above.  For example, #4 is in the second row and the first column, so fr(k) and fc(j) would respectively give the frequencies 770 and 1209.</p>
<p style="text-align:left;"><code><span style="color:#000080;">%process input<br />
k=x(1);<br />
j=x(2);<br />
fr=[697 770 852 941];<br />
fc=[1209 1336 1477];</span></code></p>
<p style="text-align:left;">Now sound is perceived as a continuous signal.  We need it to be discrete in order to digitize it.  This is done by defining a large enough sampling rate, which is the number of samples per second to take from the continuous signal and still make it appear smooth.  We want to sample for a time long enough to cover the full signal.   A quarter second will do.</p>
<p style="text-align:left;"><code><span style="color:#000080;">Fs=32768;</span><span style="color:#000080;"> t=0:1/Fs:0.25; %a vector starting at 0, inc by 1/Fs, &amp; ending w/0.25</span></code></p>
<p style="text-align:left;">Say we&#8217;re dialing long distance, and the first number we need to enter is &#8220;1&#8243;.  Here is a plot of what will be sent to the payphone.</p>
<p style="text-align:left;">
<div id="attachment_38" class="wp-caption aligncenter" style="width: 510px"><img class="size-full wp-image-38" title="tone" src="http://bruteforcephysics.files.wordpress.com/2009/07/tone.jpg?w=500&#038;h=198" alt="Tone" width="500" height="198" /><p class="wp-caption-text">Tone</p></div>
<p style="text-align:left;">That is generated by</p>
<p><code><span style="color:#000080;">y1=sin(2*pi*fr(k)*t); %vector containing row freq data<br />
y2=sin(2*pi*fc(j)*t); %vector containing column freq data<br />
y=(y1+y2)/2;%average the two; superposition<br />
plot(t,y); %plots y vs. t<br />
axis([0 1/64 -5/4 5/4]) %format: [x_1 x_2 y_1 y_2]<br />
xlabel('t(seconds)')</span></code></p>
<p><span style="color:#003366;">S</span>o now you&#8217;ve just fed the phone a mess of a sinusoidal wave.   <a href="http://faculty.unlv.edu/twaters/onetone.wav">Let&#8217;s hear it</a>:<br />
<code><span style="color:#000080;"> </span></code></p>
<p><code><span style="color:#000080;">sound(y,Fs)</span><span style="color:#000080;"> </span></code></p>
<p>Sure, we have a sound; maybe we can hack a pay phone, assuming you can find one.  But so what.  What&#8217;s interesting is how the phone will decipher the contents of the tone.  Its electronics will take a Fourier transform of the time signal, a fast and finite Fourier transform (FFT) to be exact, which is an integral that converts the time domain into the frequency domain.  Anyone/anything that can perform such an integral deserves to get paid a lot, explaining why pay phones are no longer around and why cell phones are so expensive.  The integral involves a product with a complex phase, meaning that as we integrate over time, we circle round and round on the unit circle and pick up a lot of negative components.  We therefore want a vector containing the magnitude of the FFT.  The plot of this vector of frequency values is known as a periodogram.  It is a map of the underlying frequency components of the sinusoidal signal.</p>
<p>The beauty is that you can take a FFT of pretty much anything since every signal can be decomposed into a linear combination of sinusoidal functions by Fourier&#8217;s theorem.  The value of the FFT on the frequency (horizontal) axis of the periodogram will be zero for all frequencies that are not in the original signal.  The height of the nonzero values is proportional to the variance of that frequency component.  It indicates the strength of periodicity at that frequency, as it&#8217;s a reflection of the amplitude of the original signal.  In our case, we are only after the frequencies, not the amplitudes, so we can divide by 128 to trim it down a few bits,<br />
<code><br />
<span style="color:#000080;">y = double(y)/128; %rescales the vector &amp; makes it a dbl<br />
n = length(y); %computes how many elements are y<br />
t = (0:n-1)/Fs; %rescale the time accordingly<br />
p = abs(fft(y)); %computes the magnitude of the fft<br />
f = (0:n-1)*(Fs/n); %sets the freq axis<br />
plot(f,p); %plots the periodogram<br />
axis([500 1700 0 600])</span></code></p>
<p>That&#8217;s it.  The plot should look something like</p>
<div id="attachment_41" class="wp-caption aligncenter" style="width: 510px"><img class="size-full wp-image-41" title="freqmap" src="http://bruteforcephysics.files.wordpress.com/2009/07/freqmap.jpg?w=500&#038;h=195" alt="freq map" width="500" height="195" /><p class="wp-caption-text">freq map</p></div>
<p>and clearly corresponds to &#8220;1&#8243; according to the dial pad.  You can analyze a full 11-digit signal with Cleve&#8217;s <a href="http://www.mathworks.com/moler/ncmfilelist.html">touchtone m-file</a> and the help of <a href="http://www.mathworks.com/moler/fourier.pdf">Chapter 8</a>.</p>
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		<title>MATLAB is a weapon, not a toy.</title>
		<link>http://bruteforcephysics.wordpress.com/2009/07/08/matlab-is-a-weapon-not-a-toy/</link>
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		<pubDate>Wed, 08 Jul 2009 04:39:36 +0000</pubDate>
		<dc:creator>bruteforcephysics</dc:creator>
				<category><![CDATA[Uncategorized]]></category>

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		<description><![CDATA[On more than one occasion, I’ve heard some professors refer to MATLAB as “just a toy.”  Surely they are not dismissing it as simply a portal for students to learn programming, as it is widely used in academic research as well as in industry.  What I hope think they mean is that MATLAB is a [...]<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=bruteforcephysics.wordpress.com&amp;blog=8471294&amp;post=10&amp;subd=bruteforcephysics&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
			<content:encoded><![CDATA[<p>On more than one occasion, I’ve heard some professors refer to MATLAB as “just a toy.”  Surely they are not dismissing it as simply a portal for students to learn programming, as it is widely used in <a href="http://www.mathworks.com/academia/">academic research</a> as well as in <a href="http://www.mathworks.com/industries/">industry</a>.  What I <del datetime="2009-07-08T04:35:59+00:00">hope</del> think they mean is that MATLAB is a superb exploratory environment that falls short when it comes to speed and efficiency compared to say Fortran or C++.  In memory-intensive computer programs coded with a formal programming language, MATLAB can provide an accuracy check on various portions of the code, assess the feasibility of a given algorithm, or study the relative merits of a certain computational approach.  It can serve as an excellent preliminary measure used to gain insight into the dynamics of a problem before diving in and creating an efficient program.  Or it can be used in post-processing for visualization purposes.    All in all, it is a very powerful tool, the result of three decades of intellectual outpouring by  thousands of scientists and mathematicians.  And that is probably another reason for professors calling it a toy.  The script they write will generally depend on built-in functions (otherwise they&#8217;d just code it in Fortran or C++) , and this might hinder the debugging process and complicate publishing rights.</p>
<p>The built-in functions in my opinion make MATLAB a weapon, not a toy.  They are what prompted me to start this blog, as they render accessible a playground on which to extend my imagination, to carry out on a computer screen the phenomena I try to visualize in my head.  They compensate for the time-constraints of a PhD student who would otherwise not have the time to write the necessary code for manipulating data structures that is done with ease in MATLAB.  As processors keep getting faster and faster, speed is becoming less of an issue.  At least in applied mathematics and signal processing applications,  MATLAB is frequently used as the primary computing platform, even in publications.  My guess is that MATLAB will only gain momentum as a means for both teaching and doing physics in the coming years and I hope to stay abreast of the developments.  Hablas MATLAB?</p>
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		<title>Hello world!&#8230;(via MATLAB)</title>
		<link>http://bruteforcephysics.wordpress.com/2009/07/07/hello-world/</link>
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		<pubDate>Tue, 07 Jul 2009 09:23:17 +0000</pubDate>
		<dc:creator>bruteforcephysics</dc:creator>
				<category><![CDATA[Uncategorized]]></category>
		<category><![CDATA[MATLAB]]></category>
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		<description><![CDATA[Since &#8220;Hello World&#8221; is the title of a 1st post on WordPress by default, I might as well keep it, as it is apropos to a blog that will feature a programming language. As has become customary in getting started with any program, here goes the appropriate command line in MATLAB: disp('Hello World!') &#8230;it doesn&#8217;t [...]<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=bruteforcephysics.wordpress.com&amp;blog=8471294&amp;post=1&amp;subd=bruteforcephysics&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
			<content:encoded><![CDATA[<p>Since &#8220;Hello World&#8221; is the title of a 1st post on WordPress by default, I might as well keep it, as it is apropos to a blog that will feature a programming language.</p>
<p>As has become customary in getting started with any program, here goes the appropriate command line in MATLAB:</p>
<p><code>disp('Hello World!')</code></p>
<p>&#8230;it doesn&#8217;t get more simple than that.</p>
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